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Available Analyses
Main Analyses
  • Emergent Property Inference (Bittner et al. 2019) View Analysis

    Emergent property inference (EPI) is a method for learning parameter distributions on models constrained to produce certain desirable phenomena in their output.

  • DeepLabCut (Mathis et al. 2018) View Analysis

    Markerless pose estimation of user-defined features with deep learning for all animals, including humans.

  • CaImAn (Giovannucci et al. 2019) View Analysis

    CaImAn is a python toolbox for large scale Calcium Imaging data Analysis and behavioral analysis.

  • LocaNMF (Saxena et al. 2020) View Analysis

    Region-based Decomposition for Widefield Calcium Imaging Data.

  • Penalized Matrix Decomposition (Buchanan et al. 2018) View Analysis

    Penalized Matrix Decomposition for Denoising and Compression of Functional Imaging Data.

Custom Analyses
  • DLC Tracking (Polleux) View Analysis

    Custom version of DLC tracking for freeze response behavioral data from the Polleux lab.

  • BarDensr View Analysis

    BarDensr (BARcode DEmixing through Non-negative Spatial Regression) for demixing spatial transcriptomic imaging data.

  • YASS View Analysis

    Yet Another Spike Sorter

  • DeepGraphPose (Wu et al. 2020) View Analysis

    DeepGraphPose (DGP)

  • BehaveNet (Batty et al. 2019) View Analysis

    nonlinear embedding and Bayesian neural decoding of behavioral videos.

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