Emergent property inference (EPI) is a method for learning parameter distributions on models constrained to produce certain desirable phenomena in their output.
Markerless pose estimation of user-defined features with deep learning for all animals, including humans.
CaImAn is a python toolbox for large scale Calcium Imaging data Analysis and behavioral analysis.
Region-based Decomposition for Widefield Calcium Imaging Data.
Penalized Matrix Decomposition for Denoising and Compression of Functional Imaging Data.
Custom version of DLC tracking for freeze response behavioral data from the Polleux lab.
BarDensr (BARcode DEmixing through Non-negative Spatial Regression) for demixing spatial transcriptomic imaging data.
Yet Another Spike Sorter
nonlinear embedding and Bayesian neural decoding of behavioral videos.